PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002022-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 257aa    MW: 27957.2 Da    PI: 9.1691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002022-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08167207954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  NNU_002022-RA 167 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 207
                    699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14162217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.08E-6181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDVDLLKSAT EDQLEMMMAM MQMEKFPEFC GNSPELAELP SSMDLSCGSV GTSSGTIPPT  60
FSNPPITSHA LLNPSARASL MGSGATFQEP MASTLISNTA TGSLINTGEL LGGAGASSPQ  120
KRNSMEAMRE MIFRIAAMQP IHIDPESIKP PKRRNVKISK DPQSVAARHR RERISERIRI  180
LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAN RPAGLRFPAA VSDTNYFPLA  240
KAYQQSVPLF SPTQMLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269559.10.0PREDICTED: transcription factor HEC2-like
SwissprotQ9FHA72e-50HEC1_ARATH; Transcription factor HEC1
TrEMBLE0CPU46e-98E0CPU4_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g10400.t012e-97(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-43bHLH family protein